cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Language: bash
Author: Adelheid Erler (@adelheiddev)
10 stars · 303 views
Files
- wdl (txt)
- model (txt)
- draft2 (txt)
- src (txt)
- test (txt)
- scala (txt)
- wdl (txt)
- expression (txt)
- values (txt)
- util (txt)
- types (txt)
- main (txt)
- java (txt)
- wdl (txt)
- draft2 (txt)
- parser (txt)
- scala (txt)
- wdl (txt)
- draft2 (txt)
- model (txt)
- expression (txt)
- command (txt)
- formatter (txt)
- values (txt)
- examples (txt)
- types (txt)
- exception (txt)
- shared (txt)
- src (txt)
- main (txt)
- scala (txt)
- wdl (txt)
- shared (txt)
- model (txt)
- expression (txt)
- draft3 (txt)
- src (txt)
- main (txt)
- scala (txt)
- wdl (txt)
- model (txt)
- draft3 (txt)
- elements (txt)
- graph (txt)
- expression (txt)
- transforms (txt)
- draft2 (txt)
- src (txt)
- test (txt)
- resources (txt)
- scala (txt)
- wdl (txt)
- transforms (txt)
- wdlwom (txt)
- main (txt)
- scala (txt)
- wdl (txt)
- transforms (txt)
- draft2 (txt)
- wdlom2wom (txt)
- biscayne (txt)
- src (txt)
- test (txt)
- cases (txt)
- scala (txt)
- wdl (txt)
- transforms (txt)
- biscayne (txt)
- linking (txt)
- expression (txt)
- values (txt)
- types (txt)
- files (txt)
- consumed (txt)
- ast2wdlom (txt)
- main (txt)
- java (txt)
- wdl (txt)
- biscayne (txt)
- parser (txt)
- resources (txt)
- CHANGELOG.txt (txt)
- scala (txt)
- wdl (txt)
- transforms (txt)
- biscayne (txt)
- wdlom2wom (txt)
- linking (txt)
- expression (txt)
- values (txt)
- types (txt)
- files (txt)
- consumed (txt)
- parsing (txt)
- ast2wdlom (txt)
- shared (txt)
- src (txt)
- test (txt)
- scala (txt)
- wdl (txt)
- shared (txt)
- transforms (txt)
- wdlom2wom (txt)
- main (txt)
- scala (txt)
- wdl (txt)
- shared (txt)
- transforms (txt)
- wdlom2wom (txt)
- evaluation (txt)
- values (txt)
- cascades (txt)
- src (txt)
- test (txt)
- cases (txt)
- scala (txt)
- wdl (txt)
- transforms (txt)
- cascades (txt)
- linking (txt)
- expression (txt)
- values (txt)
- types (txt)
- files (txt)
- consumed (txt)
- ast2wdlom (txt)
- main (txt)
- java (txt)
- wdl (txt)
- cascades (txt)
- parser (txt)
- resources (txt)
- CHANGELOG.txt (txt)
- scala (txt)
- wdl (txt)
- transforms (txt)
- cascades (txt)
- wdlom2wom (txt)
- linking (txt)
- expression (txt)
- values (txt)
- types (txt)
- files (txt)
- consumed (txt)
- parsing (txt)
- ast2wdlom (txt)
- new-base (txt)
- src (txt)
- main (txt)
- scala (txt)
- wdl (txt)
- transforms (txt)
- base (txt)
- wdlom2wom (txt)
- expression (txt)
- renaming (txt)
- graph (txt)
- renaming (txt)
- linking (txt)
- typemakers (txt)
- expression (txt)
- values (txt)
- types (txt)
- files (txt)
- consumed (txt)
- graph (txt)
- ast2wdlom (txt)
- wdlom2wdl (txt)
- draft3 (txt)
- src (txt)
- test (txt)
- cases (txt)
- resources (txt)
- scala (txt)
- wdl (txt)
- draft3 (txt)
- transforms (txt)
- expression (txt)
- values (txt)
- consumed (txt)
- wdlom2wom (txt)
- linking (txt)
- expression (txt)
- values (txt)
- files (txt)
- ast2wdlom (txt)
- main (txt)
- java (txt)
- wdl (txt)
- draft3 (txt)
- parser (txt)
- scala (txt)
- wdl (txt)
- draft3 (txt)
- transforms (txt)
- wdlom2wom (txt)
- linking (txt)
- expression (txt)
- values (txt)
- types (txt)
- files (txt)
- consumed (txt)
- parsing (txt)
- ast2wdlom (txt)
- codecov.yml (yml)
- docs (txt)
- Imports.md (md)
- developers (txt)
- Building.md (md)
- Arch.md (md)
- edit-run-config.png (image)
- Security.md (md)
- Contribute.md (md)
- Centaur.md (md)
- bitesize (txt)
- jobRetryLogic (txt)
- jobRetryLogic.md (md)
- Workflow_job_retry_logic_(example_with_PAPIv2_and_VM_preemption).png (image)
- IoActor (txt)
- IoActor_message_processing_graph.png (image)
- IoActor_basic_hierarchy.png (image)
- IoActor.md (md)
- majorActorSystem (txt)
- 5000FtActorSystem.md (md)
- 5000_ft_Cromwell_Actors.png (image)
- workflowExecution (txt)
- executionAndValueStoreExamples.md (md)
- workflowSubworkflowAndJobStores.md (md)
- WorkflowExecutionHighLevelOverviewInContext.png (image)
- valueStore.md (md)
- WorkflowExecutionHighLevelOverview.png (image)
- jobKeyValueStore.md (md)
- majorActors.md (md)
- executionStore.md (md)
- wdlExpressionEvaluation.md (md)
- workflowParsing (txt)
- wdlToWdlom_wdlom.svg (image)
- wdlParsingOverview.md (md)
- whatIsWom.md (md)
- wdlmap.svg (image)
- engineFunctionAddition.md (md)
- forkjoin_graph.svg (image)
- wdlToWdlom.md (md)
- wdlToWdlom_hermes.svg (image)
- horicromtal.md (md)
- general (txt)
- simpletons.md (md)
- Instrumentation.md (md)
- UpdateWDLParser.md (md)
- Backend.md (md)
- select-run-config.png (image)
- Running.md (md)
- tutorials (txt)
- HPCIntro.md (md)
- ServerMode.md (md)
- timingDiagram.png (image)
- GcpBatch101.md (md)
- MetadataEndpoint.md (md)
- TimingDiagrams.md (md)
- ConfigurationFiles.md (md)
- GeneralDebuggingTips.md (md)
- inputs.png (image)
- try.png (image)
- AwsBatch101.md (md)
- HPCSlurmWithLocalScratch.md (md)
- LocalBackendIntro.md (md)
- workflows.png (image)
- FiveMinuteIntro.md (md)
- CallCaching101.md (md)
- UserGuideMap.png (image)
- submit.png (image)
- PersistentServer.md (md)
- workflowSource.png (image)
- Overview.md (md)
- FrequentErrors.md (md)
- Containers.md (md)
- Scaling.md (md)
- wf_options (txt)
- Google.md (md)
- Overview.md (md)
- Releases.md (md)
- filesystems (txt)
- HTTP.md (md)
- Filesystems.md (md)
- GoogleCloudStorage.md (md)
- DataRepositoryService.md (md)
- FileTransferProtocol.md (md)
- Configuring.md (md)
- img (txt)
- cromwell_jira.png (image)
- favicon.ico (image)
- Logging.md (md)
- js (txt)
- extra.js (js)
- SubWorkflows.md (md)
- backends (txt)
- Volcano.md (md)
- Backends.md (md)
- SLURM.md (md)
- AWS.md (md)
- TES.md (md)
- HPC.md (md)
- LSF.md (md)
- HTcondor.md (md)
- SGE.md (md)
- AWSBatch.md (md)
- GCPBatch.md (md)
- Local.md (md)
- css (txt)
- extra.css (css)
- Ecosystem.md (md)
- cromwell_features (txt)
- Labels.md (md)
- WorkflowCallback.md (md)
- CostEstimation.md (md)
- CallCaching.md (md)
- HogFactors.md (md)
- RetryWithMoreMemory.md (md)
- set_copyright.py (py)
- Modes.md (md)
- WOMtool.md (md)
- RuntimeAttributes.md (md)
- execution (txt)
- CWP_B_fail.png (image)
- ABdependency.png (image)
- NCC_B_fail_A_retryable.png (image)
- CWP_B_fail_A_retryable.png (image)
- NNC_B_fail.png (image)
- ExecutionTwists.md (md)
- CromwellShutdownProcess.png (image)
- CWP_B_retryable_fail.png (image)
- CWP_B_retryable_fail_then_success.png (image)
- optimizations (txt)
- FileLocalization.md (md)
- VolatileTasks.md (md)
- optimizations.md (md)
- CheckpointFiles.md (md)
- LanguageSupport.md (md)
- index.md (md)
- jamie_the_cromwell_pig.png (image)
- CommandLine.md (md)
- GettingHelp.md (md)
- mkdocs.yml (yml)
- dockerHashing (txt)
- src (txt)
- test (txt)
- scala (txt)
- cromwell (txt)
- docker (txt)
- local (txt)
- registryv2 (txt)
- flows (txt)
- aws (txt)
- main (txt)
- scala (txt)
- cromwell (txt)
- docker (txt)
- local (txt)
- registryv2 (txt)
- flows (txt)
- google (txt)
- aws (txt)
- quay (txt)
- dockerhub (txt)
- engine (txt)
- src (txt)
- test (txt)
- resources (txt)
- swagger (txt)
- testservice.yaml (yaml)
- testservice.json (json)
- scala (txt)
- cromwell (txt)
- engine (txt)
- io (txt)
- gcs (txt)
- nio (txt)
- backend (txt)
- mock (txt)
- workflow (txt)
- tokens (txt)
- large (txt)
- workflowstore (txt)
- lifecycle (txt)
- deletion (txt)
- finalization (txt)
- execution (txt)
- stores (txt)
- callcaching (txt)
- job (txt)
- preparation (txt)
- mocks (txt)
- webservice (txt)
- routes (txt)
- wes (txt)
- jobstore (txt)
- main (txt)
- resources (txt)
- workflowTimings (txt)
- workflowTimings.html (html)
- ATTRIBUTION.md (markdown)