cromwell

    Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

    Language: bash

    Author: Adelheid Erler (@adelheiddev)

    10 stars · 303 views

    Files

    • wdl (txt)
    • model (txt)
    • draft2 (txt)
    • src (txt)
    • test (txt)
    • scala (txt)
    • wdl (txt)
    • expression (txt)
    • values (txt)
    • util (txt)
    • types (txt)
    • main (txt)
    • java (txt)
    • wdl (txt)
    • draft2 (txt)
    • parser (txt)
    • scala (txt)
    • wdl (txt)
    • draft2 (txt)
    • model (txt)
    • expression (txt)
    • command (txt)
    • formatter (txt)
    • values (txt)
    • examples (txt)
    • types (txt)
    • exception (txt)
    • shared (txt)
    • src (txt)
    • main (txt)
    • scala (txt)
    • wdl (txt)
    • shared (txt)
    • model (txt)
    • expression (txt)
    • draft3 (txt)
    • src (txt)
    • main (txt)
    • scala (txt)
    • wdl (txt)
    • model (txt)
    • draft3 (txt)
    • elements (txt)
    • graph (txt)
    • expression (txt)
    • transforms (txt)
    • draft2 (txt)
    • src (txt)
    • test (txt)
    • resources (txt)
    • scala (txt)
    • wdl (txt)
    • transforms (txt)
    • wdlwom (txt)
    • main (txt)
    • scala (txt)
    • wdl (txt)
    • transforms (txt)
    • draft2 (txt)
    • wdlom2wom (txt)
    • biscayne (txt)
    • src (txt)
    • test (txt)
    • cases (txt)
    • scala (txt)
    • wdl (txt)
    • transforms (txt)
    • biscayne (txt)
    • linking (txt)
    • expression (txt)
    • values (txt)
    • types (txt)
    • files (txt)
    • consumed (txt)
    • ast2wdlom (txt)
    • main (txt)
    • java (txt)
    • wdl (txt)
    • biscayne (txt)
    • parser (txt)
    • resources (txt)
    • CHANGELOG.txt (txt)
    • scala (txt)
    • wdl (txt)
    • transforms (txt)
    • biscayne (txt)
    • wdlom2wom (txt)
    • linking (txt)
    • expression (txt)
    • values (txt)
    • types (txt)
    • files (txt)
    • consumed (txt)
    • parsing (txt)
    • ast2wdlom (txt)
    • shared (txt)
    • src (txt)
    • test (txt)
    • scala (txt)
    • wdl (txt)
    • shared (txt)
    • transforms (txt)
    • wdlom2wom (txt)
    • main (txt)
    • scala (txt)
    • wdl (txt)
    • shared (txt)
    • transforms (txt)
    • wdlom2wom (txt)
    • evaluation (txt)
    • values (txt)
    • cascades (txt)
    • src (txt)
    • test (txt)
    • cases (txt)
    • scala (txt)
    • wdl (txt)
    • transforms (txt)
    • cascades (txt)
    • linking (txt)
    • expression (txt)
    • values (txt)
    • types (txt)
    • files (txt)
    • consumed (txt)
    • ast2wdlom (txt)
    • main (txt)
    • java (txt)
    • wdl (txt)
    • cascades (txt)
    • parser (txt)
    • resources (txt)
    • CHANGELOG.txt (txt)
    • scala (txt)
    • wdl (txt)
    • transforms (txt)
    • cascades (txt)
    • wdlom2wom (txt)
    • linking (txt)
    • expression (txt)
    • values (txt)
    • types (txt)
    • files (txt)
    • consumed (txt)
    • parsing (txt)
    • ast2wdlom (txt)
    • new-base (txt)
    • src (txt)
    • main (txt)
    • scala (txt)
    • wdl (txt)
    • transforms (txt)
    • base (txt)
    • wdlom2wom (txt)
    • expression (txt)
    • renaming (txt)
    • graph (txt)
    • renaming (txt)
    • linking (txt)
    • typemakers (txt)
    • expression (txt)
    • values (txt)
    • types (txt)
    • files (txt)
    • consumed (txt)
    • graph (txt)
    • ast2wdlom (txt)
    • wdlom2wdl (txt)
    • draft3 (txt)
    • src (txt)
    • test (txt)
    • cases (txt)
    • resources (txt)
    • scala (txt)
    • wdl (txt)
    • draft3 (txt)
    • transforms (txt)
    • expression (txt)
    • values (txt)
    • consumed (txt)
    • wdlom2wom (txt)
    • linking (txt)
    • expression (txt)
    • values (txt)
    • files (txt)
    • ast2wdlom (txt)
    • main (txt)
    • java (txt)
    • wdl (txt)
    • draft3 (txt)
    • parser (txt)
    • scala (txt)
    • wdl (txt)
    • draft3 (txt)
    • transforms (txt)
    • wdlom2wom (txt)
    • linking (txt)
    • expression (txt)
    • values (txt)
    • types (txt)
    • files (txt)
    • consumed (txt)
    • parsing (txt)
    • ast2wdlom (txt)
    • codecov.yml (yml)
    • docs (txt)
    • Imports.md (md)
    • developers (txt)
    • Building.md (md)
    • Arch.md (md)
    • edit-run-config.png (image)
    • Security.md (md)
    • Contribute.md (md)
    • Centaur.md (md)
    • bitesize (txt)
    • jobRetryLogic (txt)
    • jobRetryLogic.md (md)
    • Workflow_job_retry_logic_(example_with_PAPIv2_and_VM_preemption).png (image)
    • IoActor (txt)
    • IoActor_message_processing_graph.png (image)
    • IoActor_basic_hierarchy.png (image)
    • IoActor.md (md)
    • majorActorSystem (txt)
    • 5000FtActorSystem.md (md)
    • 5000_ft_Cromwell_Actors.png (image)
    • workflowExecution (txt)
    • executionAndValueStoreExamples.md (md)
    • workflowSubworkflowAndJobStores.md (md)
    • WorkflowExecutionHighLevelOverviewInContext.png (image)
    • valueStore.md (md)
    • WorkflowExecutionHighLevelOverview.png (image)
    • jobKeyValueStore.md (md)
    • majorActors.md (md)
    • executionStore.md (md)
    • wdlExpressionEvaluation.md (md)
    • workflowParsing (txt)
    • wdlToWdlom_wdlom.svg (image)
    • wdlParsingOverview.md (md)
    • whatIsWom.md (md)
    • wdlmap.svg (image)
    • engineFunctionAddition.md (md)
    • forkjoin_graph.svg (image)
    • wdlToWdlom.md (md)
    • wdlToWdlom_hermes.svg (image)
    • horicromtal.md (md)
    • general (txt)
    • simpletons.md (md)
    • Instrumentation.md (md)
    • UpdateWDLParser.md (md)
    • Backend.md (md)
    • select-run-config.png (image)
    • Running.md (md)
    • tutorials (txt)
    • HPCIntro.md (md)
    • ServerMode.md (md)
    • timingDiagram.png (image)
    • GcpBatch101.md (md)
    • MetadataEndpoint.md (md)
    • TimingDiagrams.md (md)
    • ConfigurationFiles.md (md)
    • GeneralDebuggingTips.md (md)
    • inputs.png (image)
    • try.png (image)
    • AwsBatch101.md (md)
    • HPCSlurmWithLocalScratch.md (md)
    • LocalBackendIntro.md (md)
    • workflows.png (image)
    • FiveMinuteIntro.md (md)
    • CallCaching101.md (md)
    • UserGuideMap.png (image)
    • submit.png (image)
    • PersistentServer.md (md)
    • workflowSource.png (image)
    • Overview.md (md)
    • FrequentErrors.md (md)
    • Containers.md (md)
    • Scaling.md (md)
    • wf_options (txt)
    • Google.md (md)
    • Overview.md (md)
    • Releases.md (md)
    • filesystems (txt)
    • HTTP.md (md)
    • Filesystems.md (md)
    • GoogleCloudStorage.md (md)
    • DataRepositoryService.md (md)
    • FileTransferProtocol.md (md)
    • Configuring.md (md)
    • img (txt)
    • cromwell_jira.png (image)
    • favicon.ico (image)
    • Logging.md (md)
    • js (txt)
    • extra.js (js)
    • SubWorkflows.md (md)
    • backends (txt)
    • Volcano.md (md)
    • Backends.md (md)
    • SLURM.md (md)
    • AWS.md (md)
    • TES.md (md)
    • HPC.md (md)
    • LSF.md (md)
    • HTcondor.md (md)
    • SGE.md (md)
    • AWSBatch.md (md)
    • GCPBatch.md (md)
    • Local.md (md)
    • css (txt)
    • extra.css (css)
    • Ecosystem.md (md)
    • cromwell_features (txt)
    • Labels.md (md)
    • WorkflowCallback.md (md)
    • CostEstimation.md (md)
    • CallCaching.md (md)
    • HogFactors.md (md)
    • RetryWithMoreMemory.md (md)
    • set_copyright.py (py)
    • Modes.md (md)
    • WOMtool.md (md)
    • RuntimeAttributes.md (md)
    • execution (txt)
    • CWP_B_fail.png (image)
    • ABdependency.png (image)
    • NCC_B_fail_A_retryable.png (image)
    • CWP_B_fail_A_retryable.png (image)
    • NNC_B_fail.png (image)
    • ExecutionTwists.md (md)
    • CromwellShutdownProcess.png (image)
    • CWP_B_retryable_fail.png (image)
    • CWP_B_retryable_fail_then_success.png (image)
    • optimizations (txt)
    • FileLocalization.md (md)
    • VolatileTasks.md (md)
    • optimizations.md (md)
    • CheckpointFiles.md (md)
    • LanguageSupport.md (md)
    • index.md (md)
    • jamie_the_cromwell_pig.png (image)
    • CommandLine.md (md)
    • GettingHelp.md (md)
    • mkdocs.yml (yml)
    • dockerHashing (txt)
    • src (txt)
    • test (txt)
    • scala (txt)
    • cromwell (txt)
    • docker (txt)
    • local (txt)
    • registryv2 (txt)
    • flows (txt)
    • aws (txt)
    • main (txt)
    • scala (txt)
    • cromwell (txt)
    • docker (txt)
    • local (txt)
    • registryv2 (txt)
    • flows (txt)
    • google (txt)
    • aws (txt)
    • quay (txt)
    • dockerhub (txt)
    • engine (txt)
    • src (txt)
    • test (txt)
    • resources (txt)
    • swagger (txt)
    • testservice.yaml (yaml)
    • testservice.json (json)
    • scala (txt)
    • cromwell (txt)
    • engine (txt)
    • io (txt)
    • gcs (txt)
    • nio (txt)
    • backend (txt)
    • mock (txt)
    • workflow (txt)
    • tokens (txt)
    • large (txt)
    • workflowstore (txt)
    • lifecycle (txt)
    • deletion (txt)
    • finalization (txt)
    • execution (txt)
    • stores (txt)
    • callcaching (txt)
    • job (txt)
    • preparation (txt)
    • mocks (txt)
    • webservice (txt)
    • routes (txt)
    • wes (txt)
    • jobstore (txt)
    • main (txt)
    • resources (txt)
    • workflowTimings (txt)
    • workflowTimings.html (html)
    • ATTRIBUTION.md (markdown)

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