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• visualize_atlas_performance.py (py)
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• pipeline_params_tuning_config.yaml (yaml)
• cta_singlecellnet (txt)
• pipeline_params_tuning_config.yaml (yaml)
• cta_celltypist (txt)
• pipeline_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• commands.yaml (yaml)
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• dataset_server.json (json)
• tuning (txt)
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• main.py (py)
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• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 4_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 3_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
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• main.py (py)
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• main.py (py)
• 328_138 (txt)
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• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
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• joint_embedding_jae (txt)
• main.py (py)
• GSE140203_SKIN_atac2gex (txt)
• config_yamls (txt)
• 1_test_acc_params_tuning_config.yaml (yaml)
• 0_test_acc_params_tuning_config.yaml (yaml)
• 2_test_acc_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• cluster_scdcc (txt)
• main.py (py)
• human_pbmc2_cell (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• config_yamls (txt)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
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• cluster_graphsc (txt)
• main.py (py)
• human_pbmc2_cell (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• cta_scheteronet (txt)
• main.py (py)
• 328_138 (txt)
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• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• domain_EfNST (txt)
• main.py (py)
• sub_mba (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• params (txt)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• joint_embedding_scmogcn (txt)
• main.py (py)
• GSE140203_SKIN_atac2gex (txt)
• config_yamls (txt)
• params (txt)
• 1_test_acc_params_tuning_config.yaml (yaml)
• params_run.sh (sh)
• 0_test_acc_params_tuning_config.yaml (yaml)
• 2_test_acc_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• imputation_scgnn2 (txt)
• main.py (py)
• human_melanoma_data (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 4_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 3_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• README.md (md)
• main.py (py)
• step3_default_params.yaml (yaml)
• cta_actinn (txt)
• main.py (py)
• 328_138 (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• domain_stagate (txt)
• main.py (py)
• sub_mba (txt)
• 1_test_acc_params_tuning_config.yaml (yaml)
• 0_test_acc_params_tuning_config.yaml (yaml)
• 2_test_acc_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• joint_embedding_dcca (txt)
• main.py (py)
• GSE140203_SKIN_atac2gex (txt)
• config_yamls (txt)
• params (txt)
• 1_test_acc_params_tuning_config.yaml (yaml)
• 0_test_acc_params_tuning_config.yaml (yaml)
• 2_test_acc_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• domain_louvain (txt)
• main.py (py)
• sub_mba (txt)
• config_yamls (txt)
• params (txt)
• 1_test_acc_params_tuning_config.yaml (yaml)
• 0_test_acc_params_tuning_config.yaml (yaml)
• 2_test_acc_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• cta_singlecellnet (txt)
• main.py (py)
• 328_138 (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• predict_modality_babel (txt)
• main.py (py)
• cta_celltypist (txt)
• main.py (py)
• 328_138 (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• cluster_sctag (txt)
• main.py (py)
• human_pbmc2_cell (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
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• handle_error.py (py)
• deconv_stdgcn (txt)
• main.py (py)
• hcc_liver (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• imputation_magic (txt)
• main.py (py)
• deconv_spotlight (txt)
• main.py (py)
• hcc_liver (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• cluster_scdsc (txt)
• main.py (py)
• human_pbmc2_cell (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• cluster_scdeepcluster (txt)
• main.py (py)
• human_pbmc2_cell (txt)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• cta_scdeepsort (txt)
• main.py (py)
• 328_138 (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• joint_embedding_scmvae (txt)
• main.py (py)
• GSE140203_SKIN_atac2gex (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• handle_sweep.py (py)
• imputation_graphsci (txt)
• main.py (py)
• human_melanoma_data (txt)
• config_yamls (txt)
• params (txt)
• 2_params_tuning_config.yaml (yaml)
• 4_params_tuning_config.yaml (yaml)
• 1_params_tuning_config.yaml (yaml)
• 3_params_tuning_config.yaml (yaml)
• 0_params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• results (txt)
• pipeline (txt)
• params (txt)
• cta_svm (txt)
• pipeline_tuning_config.yaml (yaml)
• params_tuning_config.yaml (yaml)
• pipeline_params_tuning_config.yaml (yaml)
• pipeline_run.sh (sh)
• run.sh (sh)
• 328_138 (txt)
• pipeline_tuning_config.yaml (yaml)
• ATTRIBUTION.md (markdown)